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PUBMED Cancer: breast cancer Method: computer-aided drug design

CADD-based discovery of novel heterocyclic pyrimidine-based CDK4/6 inhibitors: Design, synthesis, and anti-breast cancer activity studies.

Xinya Lv, Xiaoling Huang, Lulu Tian, Shidi Xu, Yujie Zhan, Hanrui Hou, Dajun Zhang, Linxiao Wang, Shan Xu
Published 2026-10-05 00:00
This study investigates the design, synthesis, and anti-tumor activity of novel CDK4/6 inhibitors targeting breast cancer. Using computer-aided drug design (CADD), the researchers screened 250 compounds and identified 40 potential inhibitors. Among these, compound 3c demonstrated the strongest inhibitory activity against CDK4/6 in breast cancer cell lines and showed significant tumor inhibition in a xenograft model.
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Cyclin-dependent kinase 4/6 (CDK4/6) plays a pivotal role in cell cycle regulation, and its abnormal activation is closely associated with the initiation and progression of breast cancer.1 However, the limited number of clinically available CDK4/6 inhibitors restricts treatment options. This study focuses on the design, synthesis, and antitumor activity investigation of novel CDK4/6 inhibitors.Employing computer-aided drug design (CADD) strategies and utilizing drug-like and bioisostere principles, we innovatively introduced pyridine-2-aminopyrimidine, thieno[3,2-d]pyrimidine, and pyrazolo[1,5-a]pyrimidine as core skeletal structures to design and screen 250 compound molecules. Based on computational results, including molecular docking and MM/GBSA binding free energy, 40 potential novel CDK4/6 inhibitors were selected for synthesis.Cellular assays validated that compound 3c exhibited the strongest inhibitory activity against CDK4/6 in breast cancer cell lines, with IC50 values of 0.11 ± 0.01 μM (MCF-7), 0.21 ± 0.01 μM (4T1), and 0.12 ± 0.01 μM (MDA-MB-231). And compound 3c demonstrated favorable CDK4/6 inhibition rates and showed a certain degree of selectivity among 23 kinases. In vitro mechanistic studies revealed that 3c consistently inhibited cell colony formation and migration. Furthermore, 3c effectively arrested the MCF-7 cell cycle at the G1 phase and induced apoptosis. In the MCF-7 xenograft model, compound 3c achieved a tumor inhibition rate of 45.20%, highlighting its significant potential as a therapeutic CDK4/6 inhibitor.

PUBMED Cancer: general cancer Method: unknown

Discovery of new quinazolin-4-ones as dual EGFR/c-SRC inhibitors with potential to overcome bypass-mediated resistance in cancer.

Mohamed A Radwan, Ragaa Y El-Mahdy, Reem K Arafa
Published 2026-10-05 00:00
This study presents the design and evaluation of new quinazolin-4-one derivatives as dual inhibitors of EGFR and c-SRC kinases. The lead compound, 9b, demonstrated potent enzymatic inhibition and significant antiproliferative activity in cellular assays. The findings suggest its potential as a therapeutic agent to overcome bypass-mediated resistance in cancer cells.
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This study reports the rational design, synthesis, and preliminary evaluation of a novel series of quinazolin-4-one derivatives. These compounds were developed as potential dual inhibitors of EGFR and c-SRC kinases to explore their utility in addressing bypass-related signaling in cancer cells. Through systematic optimization, compound 9b emerged as a lead candidate, demonstrating potent and balanced enzymatic inhibition with IC50 values of 0.057 μM (EGFR) and 0.073 μM (c-SRC). To our knowledge, this represents an unprecedented achievement in the development of dual EGFR/c-SRC inhibitors with this potency profile. In cellular assays, 9b exhibited significant antiproliferative activity, induced G0/G1 cell cycle arrest, and triggered apoptosis via modulation of p53, Bax, and Bcl-2 expression. Molecular docking and dynamics simulations confirmed stable binding modes within both kinase active site key amino acids, forming critical hinge-region interactions. Computational ADMET predictions further support its favorable drug-like properties. Collectively, 9b represents a promising dual-targeted therapeutic lead worthy of advanced preclinical development.

PUBMED Cancer: breast cancer Method: deep convolutional networks

Recent advances in biosensing platforms utilizing exosomal biomarker profiling for cancer diagnosis.

Sojin Song, Sujin Hyung, Jeeyun Lee, Hong Nam Kim, Nakwon Choi
Published 2026-10-01 00:00
This review discusses the potential of tumor-derived exosomes as biomarkers for liquid biopsy-based cancer diagnostics, highlighting their stability compared to circulating tumor DNA. It evaluates various biosensing platforms for exosomal biomarker profiling across multiple cancer types, including breast, lung, colorectal, and gastric cancers. The paper emphasizes the integration of AI-assisted analysis to enhance the sensitivity and clinical applicability of these biosensing methods, while also addressing challenges in standardization and validation.
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Tumor-derived exosomes carry multidimensional molecular cargo, including surface proteins, microRNAs, and lipids that encode tumor identity and disease dynamics. These features support their application as biomarkers for liquid biopsy-based cancer diagnostics. Circulating tumor DNA undergoes rapid nuclease-mediated degradation, whereas exosomes retain stable molecular information that reflects the proteomic, transcriptomic, and metabolic states of parent tumor cells. However, clinical translation of exosome-based sensing remains limited by variability in isolation, biological heterogeneity, and the analytical difficulty of detecting low-abundance biomarkers in clinical samples. In this review, we examine cancer-specific exosomal signatures across breast, lung, colorectal, and gastric cancers and evaluate biosensing platforms for exosomal biomarker profiling. We integrate engineering principles, clinical performance metrics, and AI-assisted analysis across complementary biosensing modalities to establish a cross-platform analytical framework. We compare optical platforms based on surface plasmon resonance, localized surface plasmon resonance, and surface-enhanced Raman scattering with photoluminescence- and electrochemical-based platforms in terms of sensitivity, clinical compatibility, and translational potential. Furthermore, we examine artificial intelligence (AI)-assisted biosensing frameworks, including classical machine learning classifiers, deep convolutional networks, ensemble models, explainable AI methods, and large language model interfaces. We evaluate how each framework addresses high-dimensional spectral complexity, nonlinear relationships among signals, and inter-patient variability in exosomal data. Finally, we identify remaining challenges, such as the lack of standardized isolation protocols and the absence of large-scale clinical validation. We further highlight minimal residual disease monitoring and early-stage cancer detection as important and underexplored directions for AI-integrated exosomal biosensing in precision oncology.

PUBMED Cancer: unknown Method: deep learning

3D-printed real-time biosensing system integrating deep learning for label-free in vitro T cell culture analysis.

Bo Li, Xiaoliang Guo, Jialin Yao
Published 2026-10-01 00:00
This study presents a novel 3D-printed biosensing system that integrates deep learning for real-time monitoring of T cell cultures. The system automates T cell culture and utilizes bright-field imaging to continuously track cell morphology, viability, and behavior. It achieves high precision in cell detection and characterization, supporting optimization in T cell expansion for immunotherapy applications.
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Recent advances in T cell-based immunotherapies highlight the urgent need for precise and dynamic monitoring across the entire cell culture pipeline. In contrast to conventional morphological assessment methods remain limited by subjectivity and static analytical paradigms, rendering them insufficient for real-time, in-process monitoring in T cell manufacturing. This capability is particularly critical for emerging metabolic reprogramming strategies, where optimizing therapeutic outcomes requires real-time tracking of dynamic cellular responses that static methods cannot provide. Here, we report a fully automated, label-free monitoring platform constructed with 3D-printed modular components that integrates automated T cell culture, real-time bright-field imaging, and deep learning algorithms. This system enables continuous tracking of T cell morphology, viability, and migratory behavior, achieving a mean average precision above 96% in cell detection and phenotypic characterization. This cost-effective architecture supports data-driven optimization of T cell expansion and provides a versatile process analytical technology for cancer immunotherapy research.

PUBMED Cancer: general cancer Method: unknown

Engineering versatile nanoplatforms for calcium homeostasis modulation and broad-spectrum disease therapies.

Yize Dong, Ying Wang, Kai Chen, Guangjie Sun, Xinyue Cao, Xiaoyan Li, Weiping Lu, Xinyue Dai, Bingcang Huang, Yu Chen
Published 2026-10-01 00:00
This paper reviews advancements in engineering nanoplatforms aimed at modulating calcium homeostasis and enhancing therapeutic precision for various diseases, including cancer. It discusses the development of nanocarriers for drug delivery, functional nano-regulators for calcium flux intervention, and sensitive nanoprobes for real-time calcium imaging. The review highlights the potential of these technologies to overcome limitations of conventional pharmacological interventions and improve treatment outcomes.
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Calcium ions (Ca2+) serve as a pivotal intracellular second messenger, participating in core physiological processes including cell proliferation, neurotransmission, and apoptosis. The maintenance of calcium homeostasis depends on the precise interplay of plasma membrane channels and intracellular organelle stores. Dysregulation of calcium signaling is implicated in the pathogenesis of multiple diseases, including Alzheimer's disease, cancer, and cardiovascular disorders. Conventional pharmacological interventions are limited by off-target effects, insufficient bioavailability, and a lack of temporal and spatial control. Ca2+-regulated nanoplatform achieves spatiotemporally controlled drug release and responsive calcium level modulation through advanced surface engineering and stimulus-responsive design, substantially improving therapeutic precision and efficacy. Furthermore, nanoprobes permit real-time monitoring of calcium dynamics with high sensitivity and resolution. This comprehensive review systematically summarizes and highlights significant advances in engineering versatile nanoplatforms for calcium homeostasis modulation, focusing on constructed nanocarriers for drug delivery, functional nano-regulators for calcium flux intervention, and sensitive nanoprobes for real-time calcium imaging and quantification. Current challenges and future directions are also discussed to inspire the development of next-generation nanotheranostic platforms for precise diagnosis and treatment of calcium homeostasis-related diseases.

PUBMED Cancer: colorectal cancer Method: unknown

Design, synthesis and structure-activity relationship study of novel indole-pyrrole scaffold compounds targeting Nur77 in colorectal tumor cells.

Qi Zhao, Jingmei Liang, Jin Zhou, Meifeng Zeng, Wenbiao Zhang, Yuan Cao, Xiaokun Zhang, Xiaohui Chen, Guobin Xie, Ying Su, Zhiping Zeng
Published 2026-09-15 00:00
This study focuses on the design and synthesis of novel indole-pyrrole scaffold compounds that target the Nur77 receptor in colorectal tumor cells. The researchers identified a compound, A6, which demonstrated strong binding affinity to Nur77 and exhibited potent anti-proliferative effects against colorectal cancer cell lines. The findings suggest that A6 induces mitotic arrest in colon cancer cells, providing a basis for further development of Nur77-targeting therapies.
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Nur77, an orphan nuclear receptor, is involved in the development and progression of multiple tumors. In our previous study, we have shown that the protein level of Nur77 is elevated in colon tumors compared to adjacent normal tissues, highlighting its potential as a promising target for colorectal cancer therapy. Significantly, we have identified BI1071 as a Nur77-targeting compound that induces apoptosis in colorectal cancer cells. Based on the scaffold of BI1071, by substituting the indole group of BI1071 with a pyrrolyl group on one side, we rationally designed and synthesized a series of novel BI1071 analogues named SIM-C-PhCF3+Cl- targeting Nur77, and the structure-activity relationship of these BI1071 derivatives was summarized. From this series of compounds, A6 exhibited the strongest binding affinity to Nur77 (Kd = 0.40 ± 0.05 μM) and the most potent anti-proliferative activity against HCT116 and MC38 colorectal tumor cell lines, with IC50 values of 0.53 ± 0.06 μM and 0.16 ± 0.007 μM, respectively. Interestingly, unlike BI1071, which triggers Nur77-dependent apoptosis, compound A6 suppressed colon cancer cell proliferation predominantly by inducing Nur77-dependent mitotic arrest. Collectively, our findings provide a foundation for further investigation and development of Nur77-targeting antimitotic molecules toward colorectal cancer therapy.

PUBMED Cancer: Ewing sarcoma Method: unknown

Discovery and characterization of YSA64, a RBM39 degrader with in vivo efficacy and potent cellular activity in pediatric Ewing sarcoma A673.

Xilin Lyu, Zhiyi Wang, Yanyan Shen, Xiancheng Wang, Yixuan Wang, Shumeng Yu, Biyu Yang, Ziqin Yan, Shijie Zhang, Yuhang Lu, He Huang, Yi Chen, Yujun Zhao
Published 2026-09-15 00:00
This study reports the discovery and characterization of YSA64, a novel RBM39 degrader that demonstrates significant cellular activity and in vivo efficacy in pediatric Ewing sarcoma A673. The compound promotes RBM39 degradation through a molecular glue mechanism, leading to extensive RNA splicing alterations and G2/M-phase cell cycle arrest. The findings suggest that RBM39 degraders could serve as potential RNA splicing-targeted anticancer agents.
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Depletion of the splicing factor RBM39 disrupts spliceosome function and induces widespread RNA splicing defects, leading to antiproliferative effects in susceptible cancer cells. Here, we report the discovery and characterization of a new series of biphenyl-containing RBM39 degraders. The lead compound 42 promotes RBM39 degradation through formation of a ternary complex with RBM39 and DCAF15/DDB1 in a Cullin-RING E3 ligase- and proteasome-dependent manner, consistent with a molecular glue mechanism. Transcriptomic analyses in HCT-116 and K562 cells revealed extensive alternative splicing alterations and suppression of cell-cycle-associated pathways, resulting in G2/M-phase arrest without apoptosis. Comparative cellular profiling identified 41 (YSA64) as a potent analog in acute myeloid leukemia MV4-11 cells and Ewing sarcoma A673 cells, disease contexts that have been minimally explored for RBM39 degraders. Notably, 41 exhibited favorable oral pharmacokinetics and significant antitumor efficacy in MV4-11 xenograft models. Collectively, this work expands the chemical space of RBM39 degraders and supports their continued development as RNA splicing-targeted anticancer agents.

PUBMED Cancer: prostate cancer Method: unknown

Sensors for urinary system applications: Current developments and future perspectives.

Huacui Xiang, Kun Hu, Elizabeth Wei, Eric Jung, Jiujiang Ji, Mingrui Wu, Yen Wei
Published 2026-09-15 00:00
This review discusses the advancements in sensor technology for urinary system applications, focusing on their role in enhancing early diagnosis, disease monitoring, and treatment precision. It highlights various types of sensors, including physical, biomarker detection, and imaging-assisted sensors, while addressing the challenges of biocompatibility and clinical translation. The integration of AI-driven sensor fusion is emphasized as crucial for the development of intelligent urological systems.
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The urinary system regulates waste filtration and fluid homeostasis, yet disorders such as chronic kidney disease, urinary tract infections, prostate cancer, and urinary stones remain major global health challenges. Current diagnostic and therapies are limited by low sensitivity, poor temporal resolution, and lack of real-time physiological feedback, hindering early intervention and precision treatment. Recent advancements in sensor technology offer innovative solutions, enhancing early diagnosis, disease monitoring, and treatment precision. This review highlights physical sensors, biomarker detection sensors and imaging-assisted sensors for urinary applications. These sensors enable early screening, continuous monitoring and precise treatment of urinary diseases, enhanced surgical navigation and personalized medication. Despite rapid progress, challenges remain in long-term biocompatibility, clinical translation, and multimodal data integration. Addressing these barriers through materials innovation and AI-driven sensor fusion will be critical for next-generation intelligent urological systems, ultimately advancing precision medicine and improving patient outcomes. This review underscores the transformative impact of sensors in urology and the need for continued innovation.

PUBMED Cancer: hepatocellular carcinoma Method: unknown

Design of fibroblast growth factor receptor (FGFR) inhibitors containing a 3,4-dihydropyrido[4,3-d]pyrimidin-2(1H)-one motif.

Yuanli Yang, Ziwei Wang, Yu Zhang, Juan Xu, Yuanyuan Li, Huaxiang Fang, Huan He, Silong Zhang
Published 2026-09-15 00:00
This study focuses on the design and synthesis of fibroblast growth factor receptor (FGFR) inhibitors featuring a specific structural motif. Among the synthesized compounds, 1a demonstrated significant efficacy in inhibiting the proliferation of Huh7 hepatocellular carcinoma cells and showed promising pharmacokinetic properties. In preclinical trials, 1a achieved a notable tumor growth inhibition rate in mice, indicating its potential as a therapeutic agent in cancer treatment.
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The fibroblast growth factor receptors (FGFRs) have garnered considerable attention as promising therapeutic targets in oncology, given their pivotal involvement in regulating cell proliferation, differentiation, and various other physiological processes. In this study, we have designed and synthesized a series of FGFR inhibitors featuring the 3,4-dihydropyrido[4,3-d]pyrimidin-2(1H)-one scaffold as a core structural motif. Notably, among these derivatives, compound 1a emerged as a potent inhibitor of four distinct FGFR subtypes, demonstrating superior efficacy in suppressing the proliferation of Huh7 hepatocellular carcinoma cells compared to BGJ398, a clinically validated FGFR inhibitor. In preclinical evaluations, 1a exhibited remarkable pharmacokinetic properties (oral bioavailability = 66.9%). In Balb/c mice bearing Huh7 xenografts, 1a achieved a 90.5% tumor growth inhibition rate at a dose of 50 mg/kg, with no discernible signs of systemic toxicity. Collectively, these findings indicate that 1a holds great potential as a broad-spectrum FGFR inhibitor for cancer treatment, supporting its further development in clinical settings.

PUBMED Cancer: breast cancer Method: unknown

In silico studies, synthesis, and biological evaluation of novel imidazopyridine-based CYP4Z1 inhibitors targeting breast cancer stem cells.

Yu Lu, Kailin Chen, Hongqi Wang, Chi Zhang, Xinting Huang, Zihan Wang, Haitao Chen, Miaomiao Niu, Hong Yao, Lufeng Zheng, Shengtao Xu, Qianqian Guo
Published 2026-09-15 00:00
This study focuses on the development of novel imidazopyridine-based inhibitors targeting the CYP4Z1 enzyme, which is implicated in promoting breast cancer stemness. Through systematic structure-activity relationship studies, a series of derivatives were synthesized, with compound C8 demonstrating the most potent inhibitory activity against CYP4Z1. In vitro and in vivo assessments indicated that C8 effectively reduced stemness marker expression and inhibited tumor-initiating capacity in breast cancer cells, highlighting its potential as a therapeutic candidate.
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Targeting cancer stem cells (CSCs) has emerged as a promising strategy for cancer therapy and prevention. The human cytochrome P450 enzyme CYP4Z1 has been identified as a potential therapeutic target due to its role in promoting breast cancer stemness. Aiming to develop potent and selective CYP4Z1 inhibitors, our strategy involved systematic structure-activity relationship (SAR) studies of the lead compound XD-2 (1-benzyl-1H-imidazo [4,5-c] pyridine), which led to its structural optimization. A series of derivatives were designed and synthesized to enhance drug-like properties, inhibitory activity, and selectivity. Among all the synthesized compounds, the preferred analog C8, which features an imidazo[4,5-c]pyridine core connected to a terminal butyl group via an amide-containing linker, exhibited the most potent CYP4Z1 inhibitory activity, with an IC50 value of 55.3 nM against CYP4Z1. Molecular docking studies revealed that the introduced side chain extended into the hydrophobic subpocket and the phenyl group established additional aromatic stacking interactions with Trp120. Subsequent in vitro and in vivo biological assessments confirmed that compound C8 potently diminished stemness marker expression, impeded spheroid formation, and attenuated both metastatic potential and tumor-initiating capacity in breast cancer cells. Collectively, these results underscore the promise of C8 as a leading candidate for advancing clinically viable CYP4Z1-targeted therapies in breast cancer.